import Database from 'better-sqlite3'; import fs from 'fs'; import path from 'path'; import { DatabaseError } from '@/types/database'; export interface SQLiteConfig { dbPath: string; vecExtensionPath: string; } export interface SQLiteQueryResult { rows: T[]; changes?: number; lastInsertRowid?: number; } class SQLiteClient { private static instance: SQLiteClient; private db: Database.Database; private config: SQLiteConfig; private readonly readOnly: boolean; private constructor() { this.config = this.getSQLiteConfig(); this.readOnly = process.env.SQLITE_READONLY === 'true'; // Initialize database connection const dbDirectory = path.dirname(this.config.dbPath); if (!this.readOnly && !fs.existsSync(dbDirectory)) { fs.mkdirSync(dbDirectory, { recursive: true }); } this.db = this.readOnly ? new Database(this.config.dbPath, { readonly: true, fileMustExist: true }) : new Database(this.config.dbPath); // Load sqlite-vec extension try { this.db.loadExtension(this.config.vecExtensionPath); console.log('SQLite vector extension loaded successfully'); } catch (error) { // Do not fail hard — allow the app to run without vector features console.error('Warning: Failed to load vector extension:', error); } // Configure SQLite settings if (this.readOnly) { try { this.db.pragma('query_only = ON'); } catch (error) { console.warn('Failed to enable query_only pragma in read-only mode:', error); } } else { this.db.pragma('foreign_keys = ON'); this.db.pragma('journal_mode = WAL'); this.db.pragma('synchronous = NORMAL'); this.db.pragma('cache_size = 10000'); this.db.pragma('temp_store = memory'); this.db.pragma('busy_timeout = 5000'); // Ensure vector virtual tables are present and healthy this.ensureVectorTables(); this.healVectorTablesIfCorrupt(); // Ensure logging schema (rename memory->logs if needed, create triggers/views) this.ensureLoggingAndMemorySchema(); } console.log('SQLite client initialized successfully'); } private getSQLiteConfig(): SQLiteConfig { const dbPath = process.env.SQLITE_DB_PATH || path.join( process.env.HOME || '~', 'Library/Application Support/RA-H/db/rah.sqlite' ); const vecExtensionPath = process.env.SQLITE_VEC_EXTENSION_PATH || './vendor/sqlite-extensions/vec0.dylib'; return { dbPath, vecExtensionPath }; } public static getInstance(): SQLiteClient { if (!SQLiteClient.instance) { SQLiteClient.instance = new SQLiteClient(); } return SQLiteClient.instance; } public query = any>( sql: string, params?: any[] ): SQLiteQueryResult { try { const sqlLower = sql.trim().toLowerCase(); // Handle different query types if (sqlLower.startsWith('select') || sqlLower.startsWith('with') || sqlLower.includes('returning')) { // SELECT queries and queries with RETURNING clause const stmt = this.db.prepare(sql); const rows = params ? stmt.all(...params) : stmt.all(); return { rows: rows as T[] }; } else { // INSERT/UPDATE/DELETE queries without RETURNING const stmt = this.db.prepare(sql); const result = params ? stmt.run(...params) : stmt.run(); return { rows: [], changes: result.changes, lastInsertRowid: Number(result.lastInsertRowid) }; } } catch (error) { console.error('SQLite query error:', error); throw this.handleError(error); } } public prepare(sql: string) { return this.db.prepare(sql); } public transaction(callback: () => T): T { if (this.readOnly) { throw { message: 'SQLite client is read-only', code: 'SQLITE_READONLY', details: 'Transactions are not allowed in read-only mode' } as DatabaseError; } // Proactively validate/repair vec vtables before any write transaction this.healVectorTablesIfCorrupt(); const txn = this.db.transaction(callback); try { return txn(); } catch (error) { throw this.handleError(error); } } public async testConnection(): Promise { try { const result = this.query('SELECT datetime() as current_time'); return result.rows.length > 0; } catch (error) { console.error('SQLite connection test failed:', error); return false; } } public async checkVectorExtension(): Promise { try { const result = this.query('SELECT vec_version() as version'); return result.rows.length > 0; } catch (error) { console.error('Vector extension check failed:', error); return false; } } public async checkTables(): Promise { try { const result = this.query( "SELECT name FROM sqlite_master WHERE type='table' AND name NOT LIKE 'sqlite_%'" ); return result.rows.map(row => row.name); } catch (error) { console.error('Table check failed:', error); return []; } } public ensureVectorExtensions(): void { try { // Test for vec_nodes and vec_chunks; create them if missing const hasVecNodes = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get('vec_nodes'); if (!hasVecNodes) { this.db.exec(` CREATE VIRTUAL TABLE vec_nodes USING vec0( node_id INTEGER PRIMARY KEY, embedding FLOAT[1536] ); `); console.log('Created vec_nodes virtual table'); } const hasVecChunks = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get('vec_chunks'); if (!hasVecChunks) { this.db.exec(` CREATE VIRTUAL TABLE vec_chunks USING vec0( chunk_id INTEGER PRIMARY KEY, embedding FLOAT[1536] ); `); console.log('Created vec_chunks virtual table'); } } catch (error) { console.warn('Vector extension not available:', error); } } private ensureVectorTables(): void { if (this.readOnly) { return; } // Wrapper to keep existing public API stable this.ensureVectorExtensions(); } private ensureLoggingAndMemorySchema(): void { if (this.readOnly) { return; } try { // 1) If logs table missing but legacy memory table exists, migrate const hasLogs = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='logs'").get(); const hasLegacyMemory = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='memory'").get(); if (!hasLogs && hasLegacyMemory) { // Drop old view to release dependency this.db.exec(`DROP VIEW IF EXISTS memory_v;`); this.db.exec(`ALTER TABLE memory RENAME TO logs;`); } // 2) Ensure logs table exists (fresh install) const hasLogsNow = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='logs'").get(); if (!hasLogsNow) { this.db.exec(` CREATE TABLE logs ( id INTEGER PRIMARY KEY, ts TEXT NOT NULL DEFAULT (CURRENT_TIMESTAMP), table_name TEXT NOT NULL, action TEXT NOT NULL, row_id INTEGER NOT NULL, summary TEXT, snapshot_json TEXT ); `); } // Ensure nodes table has expected columns for memory nodes try { const nodeCols = this.db.prepare('PRAGMA table_info(nodes)').all() as Array<{ name: string }>; const ensureNodeCol = (name: string, ddl: string) => { if (!nodeCols.some(col => col.name === name)) { try { this.db.exec(ddl); } catch (colErr) { console.warn(`Failed to add nodes.${name}`, colErr); } } }; ensureNodeCol('description', "ALTER TABLE nodes ADD COLUMN description TEXT;"); } catch (nodeErr) { console.warn('Failed to ensure nodes columns:', nodeErr); } // Ensure chats table tracks creation timestamp for ordering try { const chatCols = this.db.prepare('PRAGMA table_info(chats)').all() as Array<{ name: string }>; if (chatCols.some(col => col.name === 'created_at')) { // no-op, column exists } else if (chatCols.length > 0) { this.db.exec("ALTER TABLE chats ADD COLUMN created_at TEXT DEFAULT (CURRENT_TIMESTAMP);"); } } catch (chatErr) { console.warn('Failed to ensure chats.created_at column:', chatErr); } // 3) Helpful indexes on logs (clean up old names first) this.db.exec(` DROP INDEX IF EXISTS idx_memory_ts; DROP INDEX IF EXISTS idx_memory_table_ts; DROP INDEX IF EXISTS idx_memory_table_row; CREATE INDEX IF NOT EXISTS idx_logs_ts ON logs(ts); CREATE INDEX IF NOT EXISTS idx_logs_table_ts ON logs(table_name, ts); CREATE INDEX IF NOT EXISTS idx_logs_table_row ON logs(table_name, row_id); `); // 4) Recreate triggers to write to logs (use CREATE IF NOT EXISTS) const hasChats = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='chats'").get(); this.db.exec(` DROP TRIGGER IF EXISTS trg_nodes_ai; DROP TRIGGER IF EXISTS trg_nodes_au; CREATE TRIGGER IF NOT EXISTS trg_nodes_ai AFTER INSERT ON nodes BEGIN INSERT INTO logs(table_name, action, row_id, summary, snapshot_json) VALUES('nodes', 'insert', NEW.id, printf('node created: %s', COALESCE(NEW.title,'')), json_object('id', NEW.id, 'title', NEW.title, 'link', NEW.link)); END; CREATE TRIGGER IF NOT EXISTS trg_nodes_au AFTER UPDATE ON nodes BEGIN INSERT INTO logs(table_name, action, row_id, summary, snapshot_json) VALUES('nodes', 'update', NEW.id, printf('node updated: %s', COALESCE(NEW.title,'')), json_object('id', NEW.id, 'title', NEW.title, 'link', NEW.link)); END; DROP TRIGGER IF EXISTS trg_edges_ai; DROP TRIGGER IF EXISTS trg_edges_au; CREATE TRIGGER IF NOT EXISTS trg_edges_ai AFTER INSERT ON edges BEGIN INSERT INTO logs(table_name, action, row_id, summary, snapshot_json) VALUES('edges', 'insert', NEW.id, printf('edge %d→%d (%s)', NEW.from_node_id, NEW.to_node_id, COALESCE(NEW.source,'')), json_object( 'id', NEW.id, 'from', NEW.from_node_id, 'to', NEW.to_node_id, 'source', NEW.source, 'from_title', substr((SELECT title FROM nodes WHERE id = NEW.from_node_id), 1, 120), 'to_title', substr((SELECT title FROM nodes WHERE id = NEW.to_node_id), 1, 120) )); END; CREATE TRIGGER IF NOT EXISTS trg_edges_au AFTER UPDATE ON edges BEGIN INSERT INTO logs(table_name, action, row_id, summary, snapshot_json) VALUES('edges', 'update', NEW.id, printf('edge updated %d→%d', NEW.from_node_id, NEW.to_node_id), json_object( 'id', NEW.id, 'from', NEW.from_node_id, 'to', NEW.to_node_id, 'source', NEW.source, 'from_title', substr((SELECT title FROM nodes WHERE id = NEW.from_node_id), 1, 120), 'to_title', substr((SELECT title FROM nodes WHERE id = NEW.to_node_id), 1, 120) )); END; `); if (hasChats) { this.db.exec(` DROP TRIGGER IF EXISTS trg_chats_ai; CREATE TRIGGER IF NOT EXISTS trg_chats_ai AFTER INSERT ON chats BEGIN INSERT INTO logs(table_name, action, row_id, summary, snapshot_json) VALUES('chats', 'insert', NEW.id, printf('chat: %s (%s)', COALESCE(NEW.helper_name,''), COALESCE(NEW.thread_id,'')), json_object( 'id', NEW.id, 'helper', NEW.helper_name, 'thread', NEW.thread_id, 'user_message', COALESCE(NEW.user_message,''), 'assistant_message', COALESCE(NEW.assistant_message,''), 'user_preview', substr(COALESCE(NEW.user_message,''), 1, 120), 'assistant_preview', substr(COALESCE(NEW.assistant_message,''), 1, 120), 'system_message', COALESCE(json_extract(NEW.metadata, '$.system_message'), ''), 'input_tokens', COALESCE(json_extract(NEW.metadata, '$.input_tokens'), 0), 'output_tokens', COALESCE(json_extract(NEW.metadata, '$.output_tokens'), 0), 'cost_usd', COALESCE(json_extract(NEW.metadata, '$.estimated_cost_usd'), 0.0), 'cache_hit', COALESCE(json_extract(NEW.metadata, '$.cache_hit'), 0), 'model', COALESCE(json_extract(NEW.metadata, '$.model_used'), ''), 'tools_count', COALESCE(json_extract(NEW.metadata, '$.tool_calls_count'), 0), 'tools_used', COALESCE(json_extract(NEW.metadata, '$.tools_used'), json('[]')), 'latency_ms', COALESCE(json_extract(NEW.metadata, '$.latency_ms'), 0), 'prompt_build_ms', COALESCE(json_extract(NEW.metadata, '$.timing_breakdown.promptBuildMs'), 0), 'tools_build_ms', COALESCE(json_extract(NEW.metadata, '$.timing_breakdown.toolsBuildMs'), 0), 'model_resolve_ms', COALESCE(json_extract(NEW.metadata, '$.timing_breakdown.modelResolveMs'), 0), 'message_assembly_ms', COALESCE(json_extract(NEW.metadata, '$.timing_breakdown.messageAssemblyMs'), 0), 'stream_setup_ms', COALESCE(json_extract(NEW.metadata, '$.timing_breakdown.streamSetupMs'), 0), 'tool_loop_ms', COALESCE(json_extract(NEW.metadata, '$.timing_breakdown.toolLoopMs'), 0), 'first_token_latency_ms', COALESCE(json_extract(NEW.metadata, '$.first_token_latency_ms'), 0), 'first_chunk_latency_ms', COALESCE(json_extract(NEW.metadata, '$.first_chunk_latency_ms'), 0), 'tool_timings', COALESCE(json_extract(NEW.metadata, '$.tool_timings'), json('[]')), 'trace_id', COALESCE(json_extract(NEW.metadata, '$.trace_id'), ''), 'voice_tts_chars', COALESCE(json_extract(NEW.metadata, '$.voice_tts_chars'), 0), 'voice_tts_cost_usd', COALESCE(json_extract(NEW.metadata, '$.voice_tts_cost_usd'), 0), 'voice_tts_chars_total', COALESCE(json_extract(NEW.metadata, '$.voice_tts_chars_total'), 0), 'voice_tts_cost_usd_total', COALESCE(json_extract(NEW.metadata, '$.voice_tts_cost_usd_total'), 0), 'voice_request_id', COALESCE(json_extract(NEW.metadata, '$.voice_request_id'), ''), 'voice_tts_request_count', COALESCE(json_extract(NEW.metadata, '$.voice_tts_request_count'), 0) )); END; `); } this.db.exec(` CREATE TABLE IF NOT EXISTS voice_usage ( id INTEGER PRIMARY KEY AUTOINCREMENT, chat_id INTEGER, session_id TEXT, helper_name TEXT, request_id TEXT, message_id TEXT, voice TEXT, model TEXT, chars INTEGER, cost_usd REAL, duration_ms INTEGER, text_preview TEXT, created_at TEXT DEFAULT CURRENT_TIMESTAMP, FOREIGN KEY (chat_id) REFERENCES chats(id) ON DELETE SET NULL ); CREATE INDEX IF NOT EXISTS idx_voice_usage_session ON voice_usage(session_id, created_at); CREATE INDEX IF NOT EXISTS idx_voice_usage_chat ON voice_usage(chat_id); `); // 5) Views: logs_v (drop any legacy memory_v alias) this.db.exec(`DROP VIEW IF EXISTS logs_v; DROP VIEW IF EXISTS memory_v;`); try { this.db.exec(` CREATE VIEW logs_v AS SELECT m.id, m.ts, m.table_name, m.action, m.row_id, m.summary, m.enriched_summary, m.snapshot_json, CASE WHEN m.table_name='nodes' THEN n.title END AS node_title, CASE WHEN m.table_name='edges' THEN nf.title END AS edge_from_title, CASE WHEN m.table_name='edges' THEN nt.title END AS edge_to_title, CASE WHEN m.table_name='chats' THEN c.helper_name END AS chat_helper, CASE WHEN m.table_name='chats' THEN substr(c.user_message,1,120) END AS chat_user_preview, CASE WHEN m.table_name='chats' THEN substr(c.assistant_message,1,120) END AS chat_assistant_preview, CASE WHEN m.table_name='chats' THEN c.user_message END AS chat_user_full, CASE WHEN m.table_name='chats' THEN c.assistant_message END AS chat_assistant_full FROM logs m LEFT JOIN nodes n ON (m.table_name='nodes' AND m.row_id = n.id) LEFT JOIN edges e ON (m.table_name='edges' AND m.row_id = e.id) LEFT JOIN nodes nf ON e.from_node_id = nf.id LEFT JOIN nodes nt ON e.to_node_id = nt.id LEFT JOIN chats c ON (m.table_name='chats' AND m.row_id = c.id); `); } catch (error) { if ( !(error instanceof Error) || !/already exists/i.test(error.message || '') ) { throw error; } } // Do not recreate memory_v; alias has been removed. // 6) Clean up removed chat_memory_state table try { this.db.exec(`DROP TABLE IF EXISTS chat_memory_state;`); } catch (e) { // Ignore if table doesn't exist } // Clean up removed agent_delegations table try { this.db.exec(`DROP TABLE IF EXISTS agent_delegations;`); } catch (e) { console.warn('Failed to drop agent_delegations table:', e); } // 8) Logs retention trigger (~10k most recent rows) try { this.db.exec(` DROP TRIGGER IF EXISTS trg_logs_prune; CREATE TRIGGER IF NOT EXISTS trg_logs_prune AFTER INSERT ON logs BEGIN DELETE FROM logs WHERE id < NEW.id - 10000; END; `); } catch {} // 7) Ensure agents table schema (backward compatibility) try { const agentCols = this.db.prepare('PRAGMA table_info(agents)').all() as any[]; if (agentCols.length) { const hasKey = agentCols.some(col => col.name === 'key'); const hasComponentKey = agentCols.some(col => col.name === 'component_key'); if (!hasKey && hasComponentKey) { try { this.db.exec('ALTER TABLE agents RENAME COLUMN component_key TO key;'); } catch {} } if (!agentCols.some(col => col.name === 'role')) { try { this.db.exec("ALTER TABLE agents ADD COLUMN role TEXT NOT NULL DEFAULT 'executor';"); } catch {} } if (!agentCols.some(col => col.name === 'memory')) { try { this.db.exec('ALTER TABLE agents ADD COLUMN memory TEXT;'); } catch {} } if (!agentCols.some(col => col.name === 'prompts')) { try { this.db.exec("ALTER TABLE agents ADD COLUMN prompts TEXT DEFAULT '[]';"); } catch {} } } } catch (e) { console.warn('Agent schema ensure failed:', e); } // 8) Ensure chats schema (remove legacy focused_memory_id, ensure agent columns) if (hasChats) { try { let chatCols = this.db.prepare('PRAGMA table_info(chats)').all() as any[]; const hasFocusedMemoryId = chatCols.some((c: any) => c.name === 'focused_memory_id'); if (hasFocusedMemoryId) { console.log('Removing legacy chats.focused_memory_id column'); let flippedForeignKeys = false; try { this.db.exec('PRAGMA foreign_keys=OFF;'); flippedForeignKeys = true; this.db.exec(` BEGIN TRANSACTION; ALTER TABLE chats RENAME TO chats_legacy_cleanup; CREATE TABLE chats ( id INTEGER PRIMARY KEY, chat_type TEXT, helper_name TEXT, agent_type TEXT DEFAULT 'orchestrator', delegation_id INTEGER, user_message TEXT, assistant_message TEXT, thread_id TEXT, focused_node_id INTEGER, created_at TEXT DEFAULT (CURRENT_TIMESTAMP), metadata TEXT, FOREIGN KEY (focused_node_id) REFERENCES nodes(id) ON DELETE SET NULL ); INSERT INTO chats ( id, chat_type, helper_name, agent_type, delegation_id, user_message, assistant_message, thread_id, focused_node_id, created_at, metadata ) SELECT id, chat_type, helper_name, agent_type, delegation_id, user_message, assistant_message, thread_id, focused_node_id, created_at, metadata FROM chats_legacy_cleanup; DROP TABLE chats_legacy_cleanup; CREATE INDEX IF NOT EXISTS idx_chats_thread ON chats(thread_id); COMMIT; `); } catch (migrationErr) { console.warn('Failed to migrate chats table (focused_memory_id removal):', migrationErr); try { this.db.exec('ROLLBACK;'); } catch {} } finally { if (flippedForeignKeys) { try { this.db.exec('PRAGMA foreign_keys=ON;'); } catch {} } } chatCols = this.db.prepare('PRAGMA table_info(chats)').all() as any[]; } this.db.exec("CREATE INDEX IF NOT EXISTS idx_chats_thread ON chats(thread_id);"); const ensureCol = (name: string, ddl: string) => { if (!chatCols.some((c: any) => c.name === name)) { try { this.db.exec(ddl); } catch (colErr) { console.warn(`Failed to add chats.${name}`, colErr); } } }; ensureCol('agent_type', "ALTER TABLE chats ADD COLUMN agent_type TEXT DEFAULT 'orchestrator';"); ensureCol('delegation_id', 'ALTER TABLE chats ADD COLUMN delegation_id INTEGER;'); } catch (e) { console.warn('Failed to update chats schema:', e); } } try { const chatColsPost = hasChats ? this.db.prepare('PRAGMA table_info(chats)').all() as any[] : []; const stillHasFocusedMemoryId = chatColsPost.some((c: any) => c.name === 'focused_memory_id'); if (stillHasFocusedMemoryId) { console.warn('Skipping legacy memory table drop because chats.focused_memory_id is still present.'); } else { this.db.exec(` DROP TRIGGER IF EXISTS trg_episodic_prune; DROP TABLE IF EXISTS episodic_memory; DROP TABLE IF EXISTS episodic_pipeline_state; DROP TABLE IF EXISTS semantic_memory; DROP TABLE IF EXISTS semantic_pipeline_state; DROP TABLE IF EXISTS memory_pipeline_state; DROP TABLE IF EXISTS memory; `); } } catch (dropLegacyErr) { console.warn('Failed to drop legacy memory pipeline tables:', dropLegacyErr); } // 9) Ensure dimensions table exists (v0.1.16+ schema migration) const hasDimensions = this.db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='dimensions'").get(); if (!hasDimensions) { console.log('Creating dimensions table for v0.1.16+ features...'); this.db.exec(` CREATE TABLE dimensions ( name TEXT PRIMARY KEY, description TEXT, is_priority INTEGER DEFAULT 0, updated_at TEXT DEFAULT CURRENT_TIMESTAMP ); `); // Seed default locked dimensions const defaultDimensions = ['research', 'ideas', 'projects', 'memory', 'preferences']; const insertDimension = this.db.prepare(` INSERT INTO dimensions (name, is_priority, updated_at) VALUES (?, 1, datetime('now')) ON CONFLICT(name) DO UPDATE SET is_priority = 1, updated_at = datetime('now') `); for (const dimension of defaultDimensions) { try { insertDimension.run(dimension); } catch (e) { console.warn(`Failed to seed dimension '${dimension}':`, e); } } console.log('Dimensions table created and seeded with default locked dimensions'); } else { // Check if existing dimensions table has description column const dimensionCols = this.db.prepare('PRAGMA table_info(dimensions)').all() as Array<{ name: string }>; const hasDescription = dimensionCols.some(col => col.name === 'description'); if (!hasDescription) { console.log('Adding description column to existing dimensions table...'); try { this.db.exec('ALTER TABLE dimensions ADD COLUMN description TEXT;'); console.log('Description column added to dimensions table'); } catch (e) { console.warn('Failed to add description column to dimensions table:', e); } } } // 10) Final schema pass migrations (content→notes, event_date, dimensions.icon, drop dead columns) try { let nodeCols2 = this.db.prepare('PRAGMA table_info(nodes)').all() as Array<{ name: string }>; let nodeColNames = nodeCols2.map(c => c.name); // Rename content → notes (additive first) if (nodeColNames.includes('content') && !nodeColNames.includes('notes')) { console.log('Migrating nodes.content → nodes.notes...'); this.db.exec('ALTER TABLE nodes RENAME COLUMN content TO notes;'); nodeCols2 = this.db.prepare('PRAGMA table_info(nodes)').all() as Array<{ name: string }>; nodeColNames = nodeCols2.map(c => c.name); } if (!nodeColNames.includes('source')) { console.log('Adding nodes.source column...'); this.db.exec('ALTER TABLE nodes ADD COLUMN source TEXT;'); nodeCols2 = this.db.prepare('PRAGMA table_info(nodes)').all() as Array<{ name: string }>; nodeColNames = nodeCols2.map(c => c.name); } if (nodeColNames.includes('source')) { this.db.exec(` UPDATE nodes SET source = chunk WHERE (source IS NULL OR LENGTH(TRIM(source)) = 0) AND chunk IS NOT NULL AND LENGTH(TRIM(chunk)) > 0; `); this.db.exec(` UPDATE nodes SET source = notes, chunk_status = 'not_chunked' WHERE (source IS NULL OR LENGTH(TRIM(source)) = 0) AND notes IS NOT NULL AND LENGTH(TRIM(notes)) > 0; `); this.db.exec(` UPDATE nodes SET source = title || CASE WHEN description IS NOT NULL AND LENGTH(TRIM(description)) > 0 THEN char(10) || char(10) || description ELSE '' END, chunk_status = 'not_chunked' WHERE source IS NULL OR LENGTH(TRIM(source)) = 0; `); this.db.exec(` UPDATE nodes SET chunk_status = 'not_chunked' WHERE source IS NOT NULL AND LENGTH(TRIM(source)) > 0 AND (chunk_status IS NULL OR chunk_status != 'chunked'); `); } // Add event_date if (!nodeColNames.includes('event_date')) { this.db.exec('ALTER TABLE nodes ADD COLUMN event_date TEXT;'); // Backfill from metadata.published_date where available try { this.db.exec(` UPDATE nodes SET event_date = json_extract(metadata, '$.published_date') WHERE event_date IS NULL AND json_extract(metadata, '$.published_date') IS NOT NULL; `); } catch {} } // Add dimensions.icon const dimCols2 = this.db.prepare('PRAGMA table_info(dimensions)').all() as Array<{ name: string }>; if (!dimCols2.some(c => c.name === 'icon')) { this.db.exec('ALTER TABLE dimensions ADD COLUMN icon TEXT;'); } // Drop dead columns (requires SQLite 3.35+) // nodes.type if (nodeColNames.includes('type')) { try { this.db.exec('ALTER TABLE nodes DROP COLUMN type;'); } catch {} } // nodes.is_pinned if (nodeColNames.includes('is_pinned')) { try { this.db.exec('ALTER TABLE nodes DROP COLUMN is_pinned;'); } catch {} } // edges.user_feedback const edgeCols = this.db.prepare('PRAGMA table_info(edges)').all() as Array<{ name: string }>; if (edgeCols.some(c => c.name === 'user_feedback')) { try { this.db.exec('ALTER TABLE edges DROP COLUMN user_feedback;'); } catch {} } // edges.explanation (top-level column added alongside context JSON) if (!edgeCols.some(c => c.name === 'explanation')) { this.db.exec('ALTER TABLE edges ADD COLUMN explanation TEXT;'); // Backfill from context JSON where available try { this.db.exec(` UPDATE edges SET explanation = json_extract(context, '$.explanation') WHERE explanation IS NULL AND json_extract(context, '$.explanation') IS NOT NULL; `); } catch {} } // Recreate nodes_fts to index title + source + description try { const ftsCheck = this.db.prepare("SELECT sql FROM sqlite_master WHERE name='nodes_fts'").get() as { sql?: string } | undefined; const needsRebuild = !ftsCheck?.sql || !ftsCheck.sql.includes('source') || ftsCheck.sql.includes('notes') || ftsCheck.sql.includes('content'); if (needsRebuild) { this.db.exec('DROP TABLE IF EXISTS nodes_fts;'); this.db.exec("CREATE VIRTUAL TABLE nodes_fts USING fts5(title, source, description, content='nodes', content_rowid='id');"); this.db.exec("INSERT INTO nodes_fts(nodes_fts) VALUES('rebuild');"); } } catch (ftsErr) { console.warn('Failed to rebuild nodes_fts:', ftsErr); } } catch (schemaErr) { console.warn('Final schema pass migration error:', schemaErr); } console.log('Logging + memory schema ensured'); } catch (error) { console.error('Failed to ensure logging/memory schema:', error); } } private healVectorTablesIfCorrupt(): void { if (this.readOnly) { return; } // Attempt lightweight reads to detect CORRUPT_VTAB; if detected, drop/recreate vtables const tryRead = (table: string) => { try { this.db.prepare(`SELECT COUNT(*) as c FROM ${table}`).get(); } catch (e: any) { const msg = String(e?.message || ''); const code = (e && e.code) ? String(e.code) : ''; if (code === 'SQLITE_CORRUPT_VTAB' || msg.includes('database disk image is malformed') || msg.includes('CORRUPT_VTAB')) { console.warn(`Detected corrupted virtual table ${table} (${code || 'error'}). Recreating...`); try { this.db.exec(`DROP TABLE IF EXISTS ${table};`); } catch {} const ddl = table === 'vec_nodes' ? `CREATE VIRTUAL TABLE vec_nodes USING vec0(node_id INTEGER PRIMARY KEY, embedding FLOAT[1536]);` : `CREATE VIRTUAL TABLE vec_chunks USING vec0(chunk_id INTEGER PRIMARY KEY, embedding FLOAT[1536]);`; try { this.db.exec(ddl); console.log(`Recreated ${table} virtual table`); } catch (re) { console.error(`Failed to recreate ${table}:`, re); } } else { // Other errors should bubble up normally // eslint-disable-next-line no-unsafe-finally throw e; } } }; tryRead('vec_nodes'); tryRead('vec_chunks'); } private handleError(error: any): DatabaseError { return { message: error.message || 'SQLite operation failed', code: error.code || 'SQLITE_ERROR', details: error }; } public close(): void { this.db.close(); } } // Export singleton instance (similar to PostgreSQL client interface) export const sqliteDb = SQLiteClient.getInstance(); // Export function to get client instance export const getSQLiteClient = () => sqliteDb; // Export class for testing export { SQLiteClient };